It surrendered with the Department and is included in the surrender list of General Joseph E. Johnston at Durham Station, Orange County, NC on 26 April 1865.
http://www.nwinfo.net/~jagriffin/12thgamil.htm
However, I found a Private I. W. Seward, 12th Georgia Militia whose name appears on a list of Prisoners of War surrendered to Brig. Gen. E. M. McCook by Maj. Gen. Sam Jones, C. S. A., at Tallahassee, Fla., May 10, 1865 and paroled at Thomasville, Ga. May 22, 1865. Also, also a Private J. A. J. Shaw who signed a parole document at Head-Quarters, U. S. Forces, BGen. E. M. McCook, Thomasville, Ga., May 17, 1865
M266: Compiled Service Records of Confederate Soldiers Who Served in Organizations from the State of Georgia
What was the name of you ancestor?